PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66631.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 617aa    MW: 65495.6 Da    PI: 6.2012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66631.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06222243526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C+ f ++  C++Gd C +aHg
  MLOC_66631.1 222 PCPEFKKGAGCRRGDMCEYAHG 243
                   8******88************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.51E-1020136IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-1154141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.96556127IPR020683Ankyrin repeat-containing domain
CDDcd002049.25E-558132No hitNo description
PROSITE profilePS5008810.20592127IPR002110Ankyrin repeat
SMARTSM003569.8E-4217244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4220244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925253277IPR000571Zinc finger, CCCH-type
SMARTSM0035687253276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGEASDYDGV DVAAVSARLL ELAADDDVSA LVDLLAAHPL LADEPAPWYS PARGAEPMTP  60
LMVAAAYGSV ACLDALLLPP HLADPNRASA SSLSTPLHLA AAGGAPSAPT TVSRLLAAGA  120
DPTLLDHLHR RPSDLVALPP NSLPLKNHIL SLLGARKEWP PDPSLPDIKN GAYASDDFRM  180
YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY  240
AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA  300
AMGMGLSSPG SSFTPPLSPS GGGSGMSWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA  360
VDELLASGDY DNHLGSPASV RSARGKVLVP SNLDELFSAE MAASHSPRYA DQGGSAFSPT  420
HKAAFLNQFQ QQQSLLSPRA AATPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSS  480
APLLVGSPVV GSSWSKWGLP SGTPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT  540
LVKEPTPEKS STNGTMATES IGIFGRSASH HDSIDGEDSA ILGRSANHRG GIDGEEDAAT  600
GVIGGWLEQL QLDEMVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649400.0AK364940.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757259.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLM0Y8480.0M0Y848_HORVD; Uncharacterized protein
STRINGMLOC_66631.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-144CCCH-type zinc finger protein with ARM repeat domain